Package: calmr 0.8.1
calmr: Canonical Associative Learning Models and their Representations
Implementations of canonical associative learning models, with tools to run experiment simulations, estimate model parameters, and compare model representations. Experiments and results are represented using S4 classes and methods.
Authors:
calmr_0.8.1.tar.gz
calmr_0.8.1.zip(r-4.7)calmr_0.8.1.zip(r-4.6)calmr_0.8.1.zip(r-4.5)
calmr_0.8.1.tgz(r-4.6-any)calmr_0.8.1.tgz(r-4.5-any)
calmr_0.8.1.tar.gz(r-4.7-any)calmr_0.8.1.tar.gz(r-4.6-any)
calmr_0.8.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
calmr/json (API)
NEWS
| # Install 'calmr' in R: |
| install.packages('calmr', repos = c('https://victor-navarro.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/victor-navarro/calmr/issues
Pkgdown/docs site:https://victornavarro.org
- pati - Rat responses from Patittucci et al. 2016
Last updated from:050acf0d61. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 185 | ||
| source / vignettes | OK | 292 | ||
| linux-release-x86_64 | OK | 176 | ||
| macos-release-arm64 | OK | 163 | ||
| macos-oldrel-arm64 | OK | 184 | ||
| windows-devel | OK | 127 | ||
| windows-release | OK | 125 | ||
| windows-oldrel | OK | 143 | ||
| wasm-release | OK | 126 |
Exports:aggregateAICBICcalmr_model_graphcalmr_verbositycompare_modelsdesignexperiencesexperiences<-filterfit_modelget_designget_graph_optsget_modelget_optimizer_optsget_parametersget_plot_optsget_timingsgraphmake_experimentmappingmodel_outputsmodel_parametersNLLparametersparameters<-parseparse_designparsed_resultspatch_graphspatch_plotsphase_parserplotplot_common_scaleplot_targeted_complex_trialsplot_targeted_tbinsplot_targeted_trialsplot_targeted_typed_trialsplot_tbinsplot_trialspredictraw_resultsresultsrsarunrun_experimentset_calmr_paletteset_reward_parametersshowsupported_familiessupported_modelssupported_optimizerssupported_plotssupported_timed_modelstesttimingstimings<-trials
Dependencies:clicodacodetoolscpp11crayondata.tabledigestfarverforeachfuturefuture.applyGAggnetworkggplot2ggrepelglobalsgluegtableigraphisobanditeratorslabelinglatticelifecyclelistenvmagrittrMatrixnetworkparallellypatchworkpillarpkgconfigprogressrR6RColorBrewerRcppRcppArmadillorlangS7scalessnastatnet.commontibbleutf8vctrsviridisLitewithr
ANCCR
Rendered fromANCCR.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-04-09
Started: 2024-02-28
calmr_app
Rendered fromcalmr_app.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-04-10
Started: 2023-01-30
calmr_fits
Rendered fromcalmr_fits.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-11-13
Started: 2022-12-12
directional_models
Rendered fromdirectional_models.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2025-07-07
Started: 2025-05-07
Getting started with calmr
Rendered fromcalmr.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-11-13
Started: 2024-04-08
HD2022
Rendered fromHD2022.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-03-10
Started: 2024-02-22
heidi_similarity
Rendered fromheidi_similarity.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-11-13
Started: 2022-03-03
MAC1975
Rendered fromMAC1975.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-03-10
Started: 2024-02-22
model_parameters
Rendered frommodel_parameters.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2025-05-10
Started: 2025-05-10
parallelism_in_calmr
Rendered fromparallelism_in_calmr.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2025-07-07
Started: 2024-02-27
PKH1982
Rendered fromPKH1982.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2025-05-07
Started: 2024-02-22
RAND
Rendered fromRAND.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-04-07
Started: 2024-02-24
RW1972
Rendered fromRW1972.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-03-10
Started: 2024-02-22
SM2007
Rendered fromSM2007.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-03-10
Started: 2024-02-22
TD
Rendered fromTD.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2025-05-10
Started: 2024-04-08
using_time_models
Rendered fromusing_time_models.Rmdusingknitr::rmarkdownon May 18 2026.Last update: 2024-11-13
Started: 2024-02-26
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a graph with calmr data | calmr_model_graph get_graph_opts patch_graphs |
| Set verbosity options for calmr | calmr_verbosity |
| S4 class for calmr designs | CalmrDesign-class |
| CalmrDesign methods | CalmrDesign-methods mapping mapping,CalmrDesign-method show,CalmrDesign-method trials,CalmrDesign-method |
| S4 class for calmr experiments. | CalmrExperiment-class |
| CalmrExperiment methods | aggregate aggregate,CalmrExperiment-method CalmrExperiment-methods design design,CalmrExperiment-method experiences experiences,CalmrExperiment-method experiences<- experiences<-,CalmrExperiment-method filter filter,CalmrExperiment-method graph graph,CalmrExperiment-method length,CalmrExperiment-method parameters parameters,CalmrExperiment-method parameters<- parameters<-,CalmrExperiment-method parse parse,CalmrExperiment-method parsed_results parsed_results,CalmrExperiment-method plot plot,CalmrExperiment-method raw_results raw_results,CalmrExperiment-method results results,CalmrExperiment-method show,CalmrExperiment-method timings timings,CalmrExperiment-method timings<- timings<-,CalmrExperiment-method trials trials,CalmrExperiment-method |
| S4 class for calmr Fit | CalmrFit-class |
| CalmrFit methods | AIC AIC,CalmrFit-method BIC BIC,CalmrFit-method CalmrFit-methods NLL NLL,CalmrFit-method predict predict,CalmrFit-method show,CalmrFit-method |
| S4 class for calmr Models | CalmrModel-class |
| CalmrModel methods | CalmrModel-methods graph,CalmrModel-method parameters,CalmrModel-method parameters<-,CalmrModel-method parse,CalmrModel-method parsed_results,CalmrModel-method plot,CalmrModel-method raw_results,CalmrModel-method run run,ANCCR-method run,CalmrModel-method run,HD2022-method run,HDI2020-method run,MAC1975-method run,PKH1982-method run,RAND-method run,RW1972-method run,SM2007-method run,TD-method show,CalmrModel-method |
| S4 class for calmr representational similarity analysis | CalmrRSA-class |
| CalmrRSA methods | CalmrRSA-methods plot,CalmrRSA-method show,CalmrRSA-method test test,CalmrRSA-method |
| Run models given a set of parameters | compare_models |
| Fit model to data | fit_model |
| Get basic designs | get_design |
| Get optimizer options | get_optimizer_opts |
| Get model parameters | get_parameters |
| Get timing design parameters | get_timings |
| Make CalmrExperiment | make_experiment |
| Model information functions | get_model model_information model_outputs model_parameters supported_families supported_models supported_optimizers supported_plots supported_timed_models |
| Parse design data.frame | parse_design |
| Rat responses from Patittucci et al. 2016 | pati |
| Parses a phase string | phase_parser |
| General plotting functions | plotting_functions plot_targeted_complex_trials plot_targeted_tbins plot_targeted_trials plot_targeted_typed_trials plot_tbins plot_trials |
| General plotting options | get_plot_opts patch_plots plotting_options plot_common_scale |
| Perform representational similarity analysis | rsa |
| Run experiment | run_experiment |
| Get/set the colour/fill palette for plots | set_calmr_palette |
| Set reward parameters for ANCCR model | set_reward_parameters |
